PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG313000.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25992.8 Da    PI: 8.8681
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG313000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.8e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien + rqvtfskRrng+lKKA+ELSvLCdaeva++++s++gklye++s
  Pavir.4KG313000.2.p  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALVVISPRGKLYEFAS 59
                         79***********************************************86 PP

2K-box71.62.4e-2478171699
                K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                          ++++++++ e+ + +++ L k++e L+  +R+llGe+Le++s++eL++Le +Leksl  iR +K++ll eq+++l++ke  l+++n++Lr
  Pavir.4KG313000.2.p  78 SSKTAQQDIEQVKADAEGLAKKLEALEAYKRKLLGEKLEECSIEELHSLEVKLEKSLHCIRGRKTQLLEEQVNKLKEKEMTLRKNNEELR 167
                          334788999********************************************************************************* PP

                K-box  96 kkle 99 
                          +k +
  Pavir.4KG313000.2.p 168 EKCK 171
                          *976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.076161IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-32381IPR002100Transcription factor, MADS-box
CDDcd002657.43E-42375No hitNo description
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2582171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.64286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALVVISP RGKLYEFASA  60
SVQKTIERYR TYTKDNVSSK TAQQDIEQVK ADAEGLAKKL EALEAYKRKL LGEKLEECSI  120
EELHSLEVKL EKSLHCIRGR KTQLLEEQVN KLKEKEMTLR KNNEELREKC KNQPPLPLTP  180
ARPVITVEDD RPEQNDDDRM DVETELYLGL PGRDPRRNEV AEVRSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A3e-18372271MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B3e-18372271MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C3e-18372271MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D3e-18372271MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A3e-18372271Myocyte-specific enhancer factor 2A
3kov_B3e-18372271Myocyte-specific enhancer factor 2A
3kov_I3e-18372271Myocyte-specific enhancer factor 2A
3kov_J3e-18372271Myocyte-specific enhancer factor 2A
3p57_A3e-18372271Myocyte-specific enhancer factor 2A
3p57_B3e-18372271Myocyte-specific enhancer factor 2A
3p57_C3e-18372271Myocyte-specific enhancer factor 2A
3p57_D3e-18372271Myocyte-specific enhancer factor 2A
3p57_I3e-18372271Myocyte-specific enhancer factor 2A
3p57_J3e-18372271Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.34880.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9607740.0EU960774.1 Zea mays clone 228490 MADS-box transcription factor 56 mRNA, complete cds.
GenBankEU9625040.0EU962504.1 Zea mays clone 243238 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985919.11e-144PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_004985920.11e-144PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_012698462.11e-144PREDICTED: MADS-box transcription factor 50 isoform X2
SwissprotQ9XJ601e-123MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLQ9FR851e-126Q9FR85_MAIZE; M5 protein
STRINGGRMZM2G171365_P011e-126(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.18e-75AGAMOUS-like 20